![]() |
Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
|
Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN43433.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 228aa MW: 26132.7 Da PI: 7.918 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25 | 4.3e-08 | 22 | 59 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEd +l + v+ +G g ++R++k+c++rw++yl KHN43433.1 22 KGPWSVEEDTILQNHVATHGDG----------LKRSGKSCRLRWLNYL 59 79******************99..........68999*********97 PP | |||||||
2 | Myb_DNA-binding | 48.1 | 2.8e-15 | 65 | 108 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T +E+ +++++ ++G++ W++Iar+++ gRt++++k++w++ KHN43433.1 65 RGNITLQEQITILELHSRWGNR-WSKIARHLP-GRTDNEIKNYWRT 108 7899******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 7.901 | 17 | 59 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.3E-24 | 20 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-5 | 21 | 61 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-7 | 22 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-12 | 23 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.709 | 60 | 114 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-13 | 64 | 112 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-13 | 65 | 108 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-21 | 67 | 111 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.03E-10 | 69 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 228 aa Download sequence Send to blast |
MDVNKVKKAR SIVLDCEEEI RKGPWSVEED TILQNHVATH GDGLKRSGKS CRLRWLNYLR 60 PDVRRGNITL QEQITILELH SRWGNRWSKI ARHLPGRTDN EIKNYWRTRV IKQARNLNCD 120 VDSKQFQDAL RCVWMPRLIE RIQPPLPIPS ELTHGPAHIA TSQLGPNPTA QAQHEFHGSL 180 ELNAPLDSEH HVWGACHCFN GNSTLPLGGG DLMESLWDDL EIKHNFLA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 8e-20 | 19 | 108 | 24 | 122 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 4e-57 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003553674.1 | 1e-167 | PREDICTED: transcription factor MYB108-like | ||||
Swissprot | Q9LDE1 | 8e-59 | MY108_ARATH; Transcription factor MYB108 | ||||
TrEMBL | A0A0B2SF46 | 1e-170 | A0A0B2SF46_GLYSO; Transcription factor MYB21 | ||||
STRING | GLYMA19G40670.2 | 1e-166 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF875 | 34 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G48000.1 | 3e-65 | myb domain protein 112 |
Publications ? help Back to Top | |||
---|---|---|---|
|